igv (integrated genome viewer) software (Broad Institute Inc)
90
Structured Review
Broad Institute Inc
igv (integrated genome viewer) software
Igv (Integrated Genome Viewer) Software, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/integrative+genomics+viewer+(igv)+software/integrative+genomics+viewer/pmc12122860-184-7-14
Average 90 stars, based on 1 article reviews
Igv (Integrated Genome Viewer) Software, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/integrative+genomics+viewer+(igv)+software/integrative+genomics+viewer/pmc12122860-184-7-14
Average 90 stars, based on 1 article reviews
igv (integrated genome viewer) software - by Bioz Stars,
2026-09
90/100 stars
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1) Product Images from "Influenza A virus NS1 suppresses nuclear speckles promoted gene expression by inhibition of transcription"
Article Title: Influenza A virus NS1 suppresses nuclear speckles promoted gene expression by inhibition of transcription
Journal: npj Viruses
doi: 10.1038/s44298-025-00124-x
Figure Legend Snippet: ( A – E ) The transcriptome (6 h p.i.) of IAV infected cells were NGS-sequenced and the sorted reads were aligned to the human genome (GRCh37/hg19). The aligned reads were viewed using the IGV (integrated genome viewer) software from the Broad Institute. Shown are the alignments of the reads downstream of the polyadenylation site (pA=poly adenylation site, marked by an arrow) of the host genes A IFN1B (interferon beta 1), B NFKBIZ (NFKB Inhibitor Zeta) and C IFIT3 (Interferon Induced Protein with Tetratricopeptide Repeats 3), D MX1 (Interferon-Induced GTP-Binding Protein Mx1), E ISG20 (interferon stimulated gene 20),. Shown is a region of roughly 20 kb downstream of the poly adenylation site of each gene. L1: reads from IAV-NS1-Cyclin L1 (aa318-525) infected cells; life: reads from IAV-lifeAct NS1 infected cells; wt: reads from IAV wt infected cells. F Overall the percentage of reads up to 10 kb downstream of poly A sites is not significantly different between wt-IAV, IAV-NS1-CyclinL1, and IAV-lifeActNS1 infected cells suggesting that only a subset of transcriptional terminations is deregulated.
Techniques Used: Infection, Software, Binding Assay
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